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1

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

Kenneth J. Livak, Thomas D. Schmittgen

Journal:

Year:

2001

Language:

english

File:

PDF, 714 KB

english, 2001

2

Analyzing real-time PCR data by the comparative CT method

Schmittgen, Thomas D, Livak, Kenneth J

Journal:

Nature Protocols

Year:

2008

Language:

english

File:

PDF, 471 KB

english, 2008

3

Real-Time Quantitative PCR

Thomas D. Schmittgen

Journal:

Year:

2001

Language:

english

File:

PDF, 56 KB

english, 2001

4

Quantitative Reverse Transcription–Polymerase Chain Reaction to Study mRNA Decay: Comparison of Endpoint and Real-Time Methods

Thomas D. Schmittgen, Brian A. Zakrajsek, Alan G. Mills, Vladimir Gorn, Michael J. Singer, Michael W. Reed

Journal:

Analytical Biochemistry

Year:

2000

Language:

english

File:

PDF, 141 KB

english, 2000

5

MicroRNAs and cancer: Profile, profile, profile

Elisa Barbarotto, Thomas D. Schmittgen, George A. Calin

Journal:

International Journal of Cancer

Year:

2008

Language:

english

File:

PDF, 289 KB

english, 2008

6

Regulation of microRNA processing in development, differentiation and cancer

Thomas D. Schmittgen

Journal:

Journal of Cellular and Molecular Medicine

Year:

2008

Language:

english

File:

PDF, 117 KB

english, 2008

7

Increased expression of microRNA-155 in Epstein-Barr virus transformed lymphoblastoid cell lines

Jinmai Jiang, Eun Joo Lee, Thomas D. Schmittgen

Journal:

Genes, Chromosomes and Cancer

Year:

2006

Language:

english

File:

PDF, 193 KB

english, 2006

8

Role of microRNA-155 at early stages of hepatocarcinogenesis induced by choline-deficient and amino acid–defined diet in C57BL/6 mice

Bo Wang, Sarmila Majumder, Gerard Nuovo, Huban Kutay, Stefano Volinia, Tushar Patel, Thomas D. Schmittgen, Carlo Croce, Kalpana Ghoshal, Samson T. Jacob

Journal:

Year:

2009

Language:

english

File:

PDF, 1.67 MB

english, 2009

9

Expression of prostate specific membrane antigen and three alternatively spliced variants of PSMA in prostate cancer patients

Thomas D. Schmittgen, Sabine Teske, Robert L. Vessella, Lawrence D. True, Brian A. Zakrajsek

Journal:

International Journal of Cancer

Year:

2003

Language:

english

File:

PDF, 179 KB

english, 2003

10

Expression profiling identifies microRNA signature in pancreatic cancer

Eun Joo Lee, Yuriy Gusev, Jinmai Jiang, Gerard J. Nuovo, Megan R. Lerner, Wendy L. Frankel, Daniel L. Morgan, Russell G. Postier, Daniel J. Brackett, Thomas D. Schmittgen

Journal:

International Journal of Cancer

Year:

2007

Language:

english

File:

PDF, 716 KB

english, 2007

11

Comparison of RNA assay methods used to normalize cDNA for quantitative real-time PCR

Eun Joo Lee, Thomas D. Schmittgen

Journal:

Analytical Biochemistry

Year:

2006

Language:

english

File:

PDF, 147 KB

english, 2006

12

Expression pattern of mouse homolog of prostate-specific membrane antigen (FOLH1) in the transgenic adenocarcinoma of the mouse prostate model

Thomas D. Schmittgen, Brian A. Zakrajsek, Richard E. Hill, Qian Liu, Jerry J. Reeves, Paul D. Axford, Michael J. Singer, Michael W. Reed

Journal:

Year:

2003

Language:

english

File:

PDF, 151 KB

english, 2003

13

Effects of 5-fluorouracil, leucovorin, and glucarate in rat colon-tumor explants

Thomas D. Schmittgen, Antoinette Koolemans-Beynen, Thomas E. Webb, Thomas J. Rosol, Jessie L. -S. Au

Journal:

Cancer Chemotherapy and Pharmacology

Year:

1992

Language:

english

File:

PDF, 1.01 MB

english, 1992

14

microRNA Replacement Therapy for Cancer

Jon C. Henry, Ana Clara P. Azevedo-Pouly, Thomas D. Schmittgen

Journal:

Pharmaceutical Research

Year:

2011

Language:

english

File:

PDF, 382 KB

english, 2011

15

A methodology for the combined in situ analyses of the precursor and mature forms of microRNAs and correlation with their putative targets

Nuovo, Gerard J, Elton, Terry S, Nana-Sinkam, Patrick, Volinia, Stefano, Croce, Carlo M, Schmittgen, Thomas D

Journal:

Nature Protocols

Year:

2009

Language:

english

File:

PDF, 652 KB

english, 2009

16

Different pH Dependency of Mitomycin C Activity in Monolayer and Three-Dimensional Cultures

Wan-Ching Yen, Thomas Schmittgen, Jessie L.-S. Au

Journal:

Pharmaceutical Research

Year:

1996

File:

PDF, 972 KB

1996

17

The Role of MicroRNAs in Human Liver Cancers

Chiara Braconi, Jon C. Henry, Takayuki Kogure, Thomas Schmittgen, Tushar Patel

Journal:

Seminars in Oncology

Year:

2011

Language:

english

File:

PDF, 730 KB

english, 2011

18

Computational analysis of biological functions and pathways collectively targeted by co-expressed microRNAs in cancer

Yuriy Gusev, Thomas D Schmittgen, Megan Lerner, Russell Postier, Daniel Brackett

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 4.08 MB

english, 2007

19

Concomitant dysregulation of microRNAs miR-151-3p and miR-126 correlates with improved survival in resected cholangiocarcinoma

Megan E. McNally, Amy Collins, Sylwia E. Wojcik, James Liu, Jon C. Henry, Jinmai Jiang, Thomas Schmittgen, Mark Bloomston

Journal:

Year:

2012

Language:

english

File:

PDF, 114 KB

english, 2012

20

Human chromosome 21-derived miRNAs are overexpressed in down syndrome brains and hearts

Donald E. Kuhn, Gerard J. Nuovo, Mickey M. Martin, Geraldine E. Malana, Adam P. Pleister, Jinmai Jiang, Thomas D. Schmittgen, Alvin V. Terry Jr., Katheleen Gardiner, Elizabeth Head, David S. Feldman,

Journal:

Biochemical and Biophysical Research Communications

Year:

2008

Language:

english

File:

PDF, 401 KB

english, 2008

21

miR-199a-3p targets CD44 and reduces proliferation of CD44 positive hepatocellular carcinoma cell lines

Jon C. Henry, Jong-Kook Park, Jinmai Jiang, Ji Hye Kim, David M. Nagorney, Lewis R. Roberts, Soma Banerjee, Thomas D. Schmittgen

Journal:

Biochemical and Biophysical Research Communications

Year:

2010

Language:

english

File:

PDF, 669 KB

english, 2010

22

miR-132 and miR-212 are increased in pancreatic cancer and target the retinoblastoma tumor suppressor

Jong-Kook Park, Jon C. Henry, Jinmai Jiang, Christine Esau, Yuriy Gusev, Megan R. Lerner, Russell G. Postier, Daniel J. Brackett, Thomas D. Schmittgen

Journal:

Biochemical and Biophysical Research Communications

Year:

2011

Language:

english

File:

PDF, 592 KB

english, 2011

23

Real-time PCR quantification of precursor and mature microRNA

Thomas D. Schmittgen, Eun Joo Lee, Jinmai Jiang, Anasuya Sarkar, Liuqing Yang, Terry S. Elton, Caifu Chen

Journal:

Year:

2008

Language:

english

File:

PDF, 900 KB

english, 2008

24

Part B—MicroRNAs: MicroRNA methods

Thomas D. Schmittgen

Journal:

Year:

2008

Language:

english

File:

PDF, 70 KB

english, 2008

25

Effect of experimental treatment on housekeeping gene expression: validation by real-time, quantitative RT-PCR

Thomas D Schmittgen, Brian A Zakrajsek

Journal:

Journal of Biochemical and Biophysical Methods

Year:

2000

Language:

english

File:

PDF, 168 KB

english, 2000

26

Detection of microRNA Expression in Human Peripheral Blood Microvesicles

Hunter, Melissa Piper, Ismail, Noura, Zhang, Xiaoli, Aguda, Baltazar D., Lee, Eun Joo, Yu, Lianbo, Xiao, Tao, Schafer, Jeffrey, Lee, Mei-Ling Ting, Schmittgen, Thomas D., Nana-Sinkam, S. Patrick, Jarj

Journal:

Year:

2008

Language:

english

File:

PDF, 914 KB

english, 2008

27

Effect of 1-methyl-4-phenyl-1,2,3,6 tetrahydropyridine (MPTP) on monoamine neurotransmitters in mouse brain & heart

Raye Ann Wallace, Robert Boldry, Thomas Schmittgen, Duane Miller, Norman Uretsky

Journal:

Year:

1984

Language:

english

File:

PDF, 393 KB

english, 1984

28

Involvement of Human Micro-RNA in Growth and Response to Chemotherapy in Human Cholangiocarcinoma Cell Lines

Fanyin Meng, Roger Henson, Molly Lang, Hania Wehbe, Shail Maheshwari, Joshua T. Mendell, Jinmai Jiang, Thomas D. Schmittgen, Tushar Patel

Journal:

Gastroenterology

Year:

2006

Language:

english

File:

PDF, 1.46 MB

english, 2006

29

miR-31: a master regulator of metastasis?

Schmittgen, Thomas D

Journal:

Future Oncology

Year:

2010

Language:

english

File:

PDF, 323 KB

english, 2010

30

A Differential MicroRNA Profile Distinguishes Cholangiocarcinoma from Pancreatic Adenocarcinoma

Collins, Amy L., Wojcik, Sylwia, Liu, James, Frankel, Wendy L., Alder, Hansjuerg, Yu, Lianbo, Schmittgen, Thomas D., Croce, Carlo M., Bloomston, Mark

Journal:

Annals of Surgical Oncology

Year:

2014

Language:

english

File:

PDF, 247 KB

english, 2014

31

Transcribed ultraconserved regions are aberrantly expressed and can be modulated by interleukin 6 in cholangiocarcinoma

Braconi, Chiara, Valeri, Nicola, Gasparini, Pierluigi, Jiang, Jinmai, Kogure, Takayuki, Croce, Carlo, Schmittgen, Thomas, Patel, Tushar

Journal:

Year:

2013

Language:

english

File:

PDF, 44 KB

english, 2013

32

Retraction notice to "Human chromosome 21-derived miRNAs are over-expressed in down syndrome brains and hearts" [Biochem. Biophys. Res. Commun. 370 (2008) 473–477]

Kuhn, Donald E., Nuovo, Gerard J., Martin, Mickey M., Malana, Geraldine E., Pleister, Adam P., Jiang, Jinmai, Schmittgen, Thomas D., Terry, Alvin V., Gardiner, Katheleen, Head, Elizabeth, Feldman, Dav

Journal:

Biochemical and Biophysical Research Communications

Year:

2013

Language:

english

File:

PDF, 205 KB

english, 2013

33

Dietary apigenin reduces LPS-induced expression of miR-155 restoring immune balance during inflammation

Arango, Daniel, Diosa-Toro, Mayra, Rojas-Hernandez, Laura S., Cooperstone, Jessica L., Schwartz, Steven J., Mo, Xiaokui, Jiang, Jinmai, Schmittgen, Thomas D., Doseff, Andrea I.

Journal:

Molecular Nutrition & Food Research

Year:

2015

Language:

english

File:

PDF, 808 KB

english, 2015

34

The Human Angiotensin II Type 1 Receptor +1166 A/C Polymorphism Attenuates MicroRNA-155 Binding

Martin, Mickey M., Buckenberger, Jessica A., Jiang, Jinmai, Malana, Geraldine E., Nuovo, Gerard J., Chotani, Maqsood, Feldman, David S., Schmittgen, Thomas D., Elton, Terry S.

Journal:

Journal of Biological Chemistry

Year:

2007

Language:

english

File:

PDF, 1.29 MB

english, 2007

35

Strong Inverse Correlation Between MicroRNA-125b and Human Papillomavirus DNA in Productive Infection

Nuovo, Gerard J., Wu, Xin, Volinia, Stefano, Yan, Fengting, di Leva, Gianpiero, Chin, Nena, Nicol, Alcina F., Jiang, Jinmai, Otterson, Gregory, Schmittgen, Thomas D., Croce, Carlo

Journal:

Diagnostic Molecular Pathology

Year:

2010

Language:

english

File:

PDF, 546 KB

english, 2010

36

Hsa-miR-199a-3p by Targeting VEGFA, VEGFR1, VEGFR2, HGF and MMP2 Impedes Inter Crosstalks Between Malignant Hepatocyte and Tumor Microenvironment that Drives in Hepatocellular Carcinoma

Ghosh, Alip, Dasgupta, Debanjali, Ghosh, Amit, Roychoudhury, Shrabasti, Ray, Sukanta, Datta, Simanti, Chowdhury, Abhijit, Schmittgen, Thomas, Banerjee, Soma

Journal:

Journal of Clinical and Experimental Hepatology

Year:

2015

Language:

english

File:

PDF, 68 KB

english, 2015

37

Integrating the MicroRNome into the Study of Lung Disease

Nana-Sinkam, Serge P., Hunter, Melissa G., Nuovo, Gerard J., Schmittgen, Thomas D., Gelinas, Richard, Galas, David, Marsh, Clay B.

Journal:

American Journal of Respiratory and Critical Care Medicine

Year:

2009

Language:

english

File:

PDF, 534 KB

english, 2009

38

Diverse gene expression pattern during 5-fluorouridine-induced apoptosis

Schmittgen, Thomas, Gissel, Kari, Zakrajsek, Brian, Lawrence, B., Liu, Qian, Jupe, Eldon, Lerner, Megan, Do, Son, Brackett, Daniel

Journal:

International Journal of Oncology

Year:

2005

Language:

english

File:

PDF, 1.86 MB

english, 2005

39

Inhibition of pre-mRNA splicing by cisplatin and platinum analogs

Schmittgen, Thomas, Ju, Jing-Fang, Danenberg, Kathleen, Danenberg, Peter

Journal:

International Journal of Oncology

Year:

2003

Language:

english

File:

PDF, 1.35 MB

english, 2003

40

In vitro immunotoxicity assessment of culture-derived extracellular vesicles in human monocytes

Rosas, Lucia E., Elgamal, Ola A., Mo, Xiaokui, Phelps, Mitch A., Schmittgen, Thomas D., Papenfuss, Tracey L.

Journal:

Journal of Immunotoxicology

Year:

2016

Language:

english

File:

PDF, 1.66 MB

english, 2016

41

Antisense Inhibition of microRNA-21 or -221 Arrests Cell Cycle, Induces Apoptosis, and Sensitizes the Effects of Gemcitabine in Pancreatic Adenocarcinoma

Park, Jong-Kook, Lee, Eun Joo, Esau, Christine, Schmittgen, Thomas D.

Journal:

Year:

2009

Language:

english

File:

PDF, 719 KB

english, 2009

42

Benign Metastasizing Leiomyoma of the Lung

Nuovo, Gerard J., Schmittgen, Thomas D.

Journal:

Diagnostic Molecular Pathology

Year:

2008

Language:

english

File:

PDF, 642 KB

english, 2008

43

miR-216 and miR-217 expression is reduced in transgenic mouse models of pancreatic adenocarcinoma, knockout of miR-216/miR-217 host gene is embryonic lethal

Azevedo-Pouly, Ana Clara P., Sutaria, Dhruvitkumar S., Jiang, Jinmai, Elgamal, Ola A., Amari, Foued, Allard, David, Grippo, Paul J., Coppola, Vincenzo, Schmittgen, Thomas D.

Journal:

Functional & Integrative Genomics

Year:

2017

Language:

english

File:

PDF, 1.08 MB

english, 2017

44

Effects of local structural transformation of lipid-like compounds on delivery of messenger RNA

Li, Bin, Luo, Xiao, Deng, Binbin, Giancola, JoLynn B., McComb, David W., Schmittgen, Thomas D., Dong, Yizhou

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.24 MB

english, 2016

45

Anti-invasion and anti-migration effects of miR-199a-3p in hepatocellular carcinoma are due in part to targeting CD151

Kim, Ji, Badawi, Mohamed, Park, Jong-Kook, Jiang, Jinmai, Mo, Xiaokui, Roberts, Lewis, Schmittgen, Thomas

Journal:

International Journal of Oncology

Year:

2016

Language:

english

File:

PDF, 892 KB

english, 2016

46

Systematic evaluation of microRNA processing patterns in tissues , Systematic evaluation of microRNA processing patterns in tissues , cell lines , and tumors

Lee, Eun Joo, Baek, Myungwon, Gusev, Yuriy, Lee, E U N J O O, Baek, Myungwon, Gusev, Yuriy, Brackett, Daniel J, Nuovo, Gerard J, Schmittgen, Thomas D

Year:

2008

Language:

english

File:

PDF, 550 KB

english, 2008

47

Achieving the Promise of Therapeutic Extracellular Vesicles: The Devil is in Details of Therapeutic Loading

Sutaria, Dhruvitkumar S., Badawi, Mohamed, Phelps, Mitch A., Schmittgen, Thomas D.

Journal:

Pharmaceutical Research

Year:

2017

Language:

english

File:

PDF, 1.10 MB

english, 2017

48

miR-221 regulates CD44 in hepatocellular carcinoma through the PI3K-AKT-mTOR pathway

Kim, Jihye, Jiang, Jinmai, Badawi, Mohamed, Schmittgen, Thomas D.

Journal:

Biochemical and Biophysical Research Communications

Year:

2017

Language:

english

File:

PDF, 1.22 MB

english, 2017

49

Correlation of Human Bladder Tumor Histoculture Proliferation and Sensitivity to Mitomycin C with Tumor Pathobiology

Schmittgen, Thomas D., Weaver, Jean M., Badalament, Robert A., Wientjes, M. Guillaume, Klein, Eric A., Young, Donn C., Au, Jessie L.-S.

Journal:

The Journal of Urology

Year:

1994

File:

PDF, 149 KB

1994

50

RNA Isolation from Mouse Pancreas: A Ribonuclease-rich Tissue

Azevedo-Pouly, Ana Clara P., Elgamal, Ola A., Schmittgen, Thomas D.

Journal:

Journal of Visualized Experiments

Year:

2014

Language:

english

File:

PDF, 209 KB

english, 2014